Thanks ciper for the forum thread and solution. I have been banging my head on the keyboard the past two weekends trying to figure out the right combination of params to backup and restore. I finally typed in the right search and found this. I downloaded and booted into 1.3b and was finally able to see my partitions.
Steps for my DSR6000:
installed MFSLive 1.4 into my Linux grub menu (no need for CDs and faster boot

)
boot MFSLive 1.4 (non-byteswap option)
backup (-f 9999 -so) from old drive
restore (-s 127 -nxzpi) to new drive
boot MFSLive 1.4 byteswap option but no partitions
restore (-s 127 -b -nxzpi) from MFSLive 1.4 byteswap option
still no partitions
may have tried backup and restore after booting MFSLive 1.4 byteswap option but don't recall
not sure which restore procedure was last, probably restore in non-byteswap mode
still no partitions in byteswap mode but tivo boots with it
read this thread
added MFSLive 1.3b to grub menu
booted MFSLive 1.3b byteswap option and see partitions
I was gonna delve deeper and start with a clean drive by zeroing it out (dd if=/dev/zero) but I just want my tivo up and running again

I have read that DMA and byteswapping cannot be on at the same time regardless of the boot CD so maybe the ide=nodma setting isn't taking effect and the bswap setting is then ignored. Thanks again for the info.